PhD course:
Advanced Course in Modern Molecular Modeling (ACM3)
Course code: 3A5712
Credits: 8 ETCS
Requirements: Exercises solved required for passing the course.
Lecturers: Boris Minaev (boris-at-theochem.kth.se), Olav Vathras (vathras-at-theochem.kth.se), Zilvinas Rinkevicius (rinkevic-at-theochem.kth.se)
Schedule:
Tuesdays at 14-16, Wednesdays, Thursdays at 10-12
Dates;
November: 4,5, 11,12,13, 18,19,20, 24(Mon),25,26
December: 2,3,4, 8(Mon),9,10
Lecture overview: (17 lectures)
2L 1 - Wave-mechanical concepts.
-
Potential well and hydrogen atom
- Schr ̈odinger theory of hydrogen atom
- Periodic table. SCF AO, Slater AO, Gauss AO
- Chemical variety as a combination of few notes
in music
- (s, p, d, f
instead of do, re, mi, fa, ...)
2L 2 - Angular momentum and
atomic energy levels.
- Spin of electron.
- The Antisymmetry rule (Pauli principle). Slater
determinant.
- Spin-orbit coupling (SOC) in atoms
- The Russell-Saunders scheme
- Addition of Angular momentum
- Terms of configurations 2p3p and 2p2
- Lande interval rule
- Slater-Condon parameters. Hund’s rule
- Transition from Russell-Saunders coupling
scheme to j - j coupling
- Mg and Fe in the ground and excited states
2L 3 - Born-Oppenheimer
approximation.
- The electronic wave function as a slowly varying
function of nuclear displacements
- Validity of BO approximation in ground and
excited states
- The Jahn-Teller effect
2L 4 - Quantum nature of the
chemical bond.
- Ionic bond in NaCl. Covalent bond
- Heitler-London method for H2 molecule
- Orbital and spin wave functions. Overlap integral
- Exchange integral. The concept of Heisenberg
exchange spinhamiltonian
- The singlet ground state of the H2 molecule and
its chemistry
- The triplet state of the H2 molecule and its
photochemistry
- The role of the triplet state in chemistry and
catalysis
2L 5 - Simple MO Theory of
diatomic molecules.
- Effective single-electron hamiltonian
- Variation theorem. MO LCAO approximation
- H2 molecule
- Huckel approximations
- MOs of Homo-nuclear diatomic molecules
- United atom atom and correlation diagram.
Rydberg states
- Ground and excited states state of the O2
molecule
- Hetero-nuclear diatomic molecules. The non-
crossing rule
2L 6 - Simple polyatomic
molecules.
- H+2 ion. Mass spectrometry
- The H2O molecule. The C2v point group. MO
and valence bond description
-
Hybridization
2L 7 - Huckel theory of organic chemistry.
- Ethylene and butadiene
- Benzene and nathtalene
- The use of symmetry in Huckel MO theory
- Aromaticity and 4n+2 rule
- Problem of heteroatoms. Formaldehyde dipole moment
- Atomic charge and electronegativity concept
- Bond order
2L 8 - Molecular Symmetry.
- Molecular Spectroscopy
- Vibration-Rotation Spectra
- Electronic Spectra
- Symmetry elements
- Group Theory in quantum mechanics
- Selection rules in spectra
2L 9 - Spectroscopy and molecular orbital concept.
- Electric dipole transition moment in ethylene and butadiene
- Polarization of S-S transitions and symmetry selection rules
- ππ* and nπ transitions. Solvent effects
- Photoelectron spectra as direct experimental verification of the MO concept
- EPR spectroscopy for radicals. Anion radicals of hydrocarbons. Hyperfine coupling. Spin polarization
2L 10 - Independent Particle Models.
- The total energy of the closed shell
- Fock equations
- Koopman’s theorem
- Roothaan equations
2L 11 - Electron Correlation CI
- The concept of electronc correltion
- Configuration Interaction
- Configuration interaction for single excitations upon the closed shell. Ethylene spectrum
- Configuration interaction (CI) in 3,1Σ-, 3,1∆ and 3,1Σ+ states of π3π*1 configuration in diatomics
- CI for double excitations upon the closed shell
- Comparison of MO CI and valence bond methods for H2 molecule
2L 12 - Perturbation Theory
- Moller-Plesset Perturbation Theory
- Ordinary (RS) perturbation theory
- MP2 energy expresssions in different orders
- Size-consistency, convergence/divergence of the expansion
2L 13 - Relativistic effects in molecules.
- General role of relativity in molecules
- Spin-orbit coupling
- SOC in small molecules
- SOC in reactions of enzymes
2L 14 - Introduction to Second quantization
- Definition of Fock space
- Field (creation and annihilation) operators, properties and algebra
- Quantum mechanical operators in second quantization
- Spin-orbital vs orbital formulation
- Unitary transformations
- Optimization of wave functions
2L 15 - Introduction to Response Theory
- Derivation of response functions
- Linear and non-linear response functions
- Residue analysis
- Singlet versus triplet operators
2L 16 - Calculations of molecular response properties
- HF - response functions (TDHF, RPA)
- DFT - response functions (TDDFT)
- MCSCF and coupled cluster response
- Excited state properties
- Brief survey of applications
2L 17 - Magnetic Resonance Parameters
- Effective spin Hamiltonians
- Hyperfine interaction
- g-tensors
- Zero-field splitting
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