Hightlight Paper:
Rotations of occupied invariant subspaces in self–consistent field calculations
Preliminaries
The last twenty years, electronic structure calculations using
Kohn–Sham Density Functional Theory have become very
popular. For insulators, it is possible to perform electronic
structure calculations with a computational effort that increases only
linearly with system size. Linear scaling is achieved by the use of
computational approximations. Examples include Cauchy–Schwarz
screening of integrals, multipole approximations, approximate
numerical integration, and removal of small matrix elements to keep
matrices sparse. These approximations are usually governed by one or
several threshold values. Although tightening the threshold values
typically gives more accurate results at a higher computational cost,
a direct relation between threshold value and accuracy in the electron
density is usually not known. Therefore, linear scaling Density
Functional calculations are plagued by suboptimal ad hoc
selected threshold values.
Mathematical Framework
In this paper, a mathematical framework to directly relate
computational approximations to the accuracy in the electron density
is proposed. The self–consistent field procedure as used in
Hartree–Fock and Kohn–Sham calculations is viewed as a
sequence of rotations of the so–called occupied invariant
subspace of the potential and density matrices. Computational
approximations are characterized as erroneous rotations of this
subspace. Differences between subspaces are measured and controlled by
the canonical angles between them.
No more ad hoc threshold values
With this approach, a first step is taken toward a method where errors
from computational approximations are rigorously controlled and
threshold values are directly related to the accuracy of the current
trial density, thus eliminating the use of ad hoc selected
threshold values. Then, the use of computational resources can be kept
down as much as possible without impairment of the self–consistent
field convergence.
Figures:
In the calculations presented in this figure, perturbations of
the density matrix and the Fock matrix are controlled by the use of
the mathematical framework of this paper. The rotation of the occupied
invariant subspace of these two matrices due to the perturbation, as
measured by the canonical angles, is plotted. The line at 10-4
indicates the requested accuracy. The results are for a hydride
molecule test set and a water droplet test set.
Publication reference >>
Emanuel H. Rubensson, Elias Rudberg, and Paweł Sałek
Journal of Mathematical Physics 49, 032103 (2008)
Earlier highlight papers
 |
|
Importance of the Intramolecular Hydrogen Bond on Photochemistry of Anionic Hydroquinone (FADH.) in DNA Photolyase
DNA photolyases are flavoproteins that are responsible for the repair photocycle of UV damaged DNA. The key cofactor in DNA photolyase is fla
vin molecules. It is believed that with the help of electron-transfer redox cycle of anionic hydroquinone (FADH-), which is the fully
reduced form of flavin molecule...
» read more »
|
 |
|
Product Protection, a Key to Developing High Performance Methane Selective Oxidation Catalysts
Selective oxidation of methane(CH4) to methanol (CH3OH) was achieved by Periana in 1998, by using a platinum(II)
complex as the catalyst in fuming sulfuric acid (H2SO4) at 220°C. The transformation of methane to methanol is
complicated by the fact that the homolytic bond strength of the C-H bond is higher in methane than in methanol...
» read more »
|
 |
|
Ab Initio Study of Coherent Anti-Stokes Raman Scattering (CARS) of the 1,3,5-Trinitro-1,3,5-Triazacyclohexane (RDX) Explosion Molecule.
Advances in coherent anti-Stokes Raman scattering (CARS) over the recent years have turned this technique into a unique and powerful tool used worldwide to probe structure and function of molecular or composite materials in biology.
In the biomedical area, CARS detection makes it is possible...
» read more »
|
 |
|
Time-dependent closed and open-shell density functional theory from the perspective of partitioning techniques and projections
The application of density functional theory has grown immensely the last two decades. Our department has taken strong interest in the development of time-dependent density functional thoery...
» read more »
|
 |
|
Theoretical studies of angle-resolved ion yield spectra of core-to-valence transitions of acetylene Gas phase experiments cannot get information on symmetries of particular photo-excited states. Our theoretical multi-mode approach includes ab initio calculations of the potential energy surfaces of the ground and inner-shell excited states, and their transition dipole moments. The theory explains quantitatively the experimental data for the acetylene molecule.
» read more »
|
 |
|
Simulation of Inelastic Electronic Tunneling Spectra of Adsorbates from First-Principles
Vibration spectrum is a fingerprint property of molecules, clusters, or more complex structures such as single molecule adsorbed on metal surfaces. We implement an approach for first principles simulations for inelastic electron tunneling spectra...
» read more »
|
 |
|
Reaction mechanism of the dinuclear zinc enzyme N-Acyl-L-homoserine Lactone Hydrolase is investigated by DFT. This enzyme is responsible for quorum sensing, the way bacteria communicate with one another through extracellular signaling molecules to monitor their own population density.
» read more »
|
 |
Controlling Errors in Self–Consistent
Field Calculations A mathematical framework to directly relate
computational approximations in Hartree–Fock/Kohn–Sham
calculations to the accuracy in the electron density is proposed.
This framework has the potential to eliminate the need for ad
hoc parameters in large Hartree–Fock/Kohn–Sham
calculations.
» read more »
|
 |
Properties of a Biophotovoltaic Nanodevice
Properties of an on-chip photovoltaic nanodevice are demonstrated where the
dyes comprise green florescent proteins. A correlation between UV-vis spectrum of the GFP and the zero external potential bias (ZEPB) of the device is reported. The temperature dependence suggests the ZEPB photocurrent to reflect a liquid crystal type ordering where the current declines monotonically with
increasing temperature...
» read more »
|
 |
Hartree-Fock calculations with linearly scaling memory usage
We present in this paper an implementation of a set of algorithms for performing Hartree-Fock calculations with resource requirements in terms of both time and memory directly proportional to the system size. In particular, a way of computing the Hartree-Fock exchange...
» read more »
|
 |
Temperature-Dependent Statistical Behavior of Single Molecular Conductance in Aqueous Solution
We have combined molecular dynamics simulations with first principles calculations to study electron transport in a single molecule...
» read more »
|
 |
|
Lossless negative dielectric constant from quantum dot exciton polaritons. Prospects for a lossless negative dielectric constant material for optical devices were studied in this project using a mixture of two types of quantum dots. The simulations indicated that with sufficient gain...» read more »
|
|